| MirGeneDB ID | Eca-Mir-197 |
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| Family name |
MIR-197 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-197
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| Paralogues |
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| Orthologues |
Bta-Mir-197
Cfa-Mir-197
Cja-Mir-197
Cpo-Mir-197
Dno-Mir-197
Hsa-Mir-197
Laf-Mir-197
Mml-Mir-197
Mmr-Mir-197
Ocu-Mir-197
Pab-Mir-197
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009152.1: 55117037-55117097 [-]
UCSC
Ensembl
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| Seed |
UCACCAC |
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Precursor
(pre-Mir +30nt flank) |
CUGCUGGAAUCUGUGCUCCGGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUAAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAUGGCCGGCACACUUUGGUCUACGGCACAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGCUGGAAUCUGUGCUCCGGG--| C A CA GA UAAGAG
GGCUGUGC GGGU GAGAGGG GUGG GG \
CCGGUACG CCCA CUCUUCC CACU CC C
UACACGGCAUCUGGUUUCACACGG^ A C AC UC ACUUCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-197_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGGUAGAGAGGGCAGUGGGAGG -23
Get sequence
|
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| Mature sequence |
Eca-Mir-197_3p |
| mirBase accession | MIMAT0012959 |
|---|
| Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|
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