Mir-30-P2d

MirGeneDB ID

Gga-Mir-30-P2d

Family name

MIR-30 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-30c-1

Paralogues

Gga-Mir-30-P1a Gga-Mir-30-P1b Gga-Mir-30-P1d Gga-Mir-30-P2a Gga-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

23: 5080082-5080142 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P1d 23: 5078861-5078924 [+] UCSC Ensembl
Mir-30-P2d 23: 5080082-5080142 [+] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

GUGACGUGGACCCUACCAUGCUGUAGCACGUGUAAACAUCCUACACUCUCAGCUGUGAACUCGAGGUGGCUGGGAGAGGAUUGUUUACGCCUUCUGCCAUGGAGUGAACAUCUGGUGAGCU

Get precursor sequence

Structure

        10        20           30         40        50        60 
GUGACGUGGACCCUACCAUG    A   C---        -|    ACA         GUGAAC 
                    CUGU GCA    GUGUAAAC AUCCU   CUCUCAGCU      \
                    GGUA CGU    CGCAUUUG UAGGA   GAGGGUCGG      U
UCGAGUGGUCUACAAGUGA-    C   CUUC        U^    ---         UGGAGC 
 .       110        100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-30-P2d_5p

mirBase accession

MIMAT0001137

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-30c-5p
miRDB: MIMAT0001137

Star sequence

Gga-Mir-30-P2d_3p*

mirBase accession

MIMAT0031105

Sequence

39- CUGGGAGAGGAUUGUUUACGCC -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-30c-1-3p
miRDB: MIMAT0031105