Mir-30-P2d

MirGeneDB ID

Loc-Mir-30-P2d

Family name

MIR-30 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-30-P1a Loc-Mir-30-P1b Loc-Mir-30-P1d Loc-Mir-30-P2a Loc-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG6: 589316-589375 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P2d LG6: 589316-589375 [-] Ensembl
Mir-30-P1d LG6: 589512-589575 [-] Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

UGAGCCGUGGCCAGGGCUGUGUGUAAGGGGUGUAAACAUCCUACACUCUCAGCUGUGACAACAGGGAGCUGGGAGAGGGGUGUUUACGCUCUUUGCCACAGAAGGCGGUGCAGCUGCAGG

Get precursor sequence

Structure

        10           20        30        40        50        60
UGAGCCGUGGCCAGGGC---|   U                    ACA         GUGAC 
                    UGUG GUAAGGGGUGUAAACAUCCU   CUCUCAGCU     A
                    ACAC CGUUUCUCGCAUUUGUGGGG   GAGGGUCGA     A
GGACGUCGACGUGGCGGAAG^   -                    A--         GGGAC 
.       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-30-P2d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Loc-Mir-30-P2d_3p*

mirBase accession

None

Sequence

38- CUGGGAGAGGGGUGUUUACGCU -60

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