| MirGeneDB ID | Lch-Mir-30-P2d |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-30-P1a Lch-Mir-30-P1b Lch-Mir-30-P1d Lch-Mir-30-P2a Lch-Mir-30-P2b |
| Orthologues | Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126929.1: 1094991-1095051 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-30-P2d) |
Mir-30-P2d
JH126929.1: 1094991-1095051 [-]
Ensembl
Mir-30-P1d JH126929.1: 1095854-1095915 [-] Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
GCCAUGUAGAAGCUGCCAUGUAGUAGUGCGUGUAAACAUCCUACACUCUCAGCUGUGUAUGUGAGCAAGCUGGGAGAGGGGUGUUUACUCUCAUUUCCAUGGGCUGAACAUCAGAGGAAUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCCAUGUAGAAGCUGCC----| UAGU CGU ACA GUGUAU AUG AGUG GUAAACAUCCU CUCUCAGCU \ UAC UUAC CAUUUGUGGGG GAGGGUCGA G AUAAGGAGACUACAAGUCGGG^ CU-- UCU A-- ACGAGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-30-P2d_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
|
| Star sequence | Lch-Mir-30-P2d_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CUGGGAGAGGGGUGUUUACUCU -61
Get sequence
|
