Mir-19-P2c

MirGeneDB ID

Hsa-Mir-19-P2c

Family name

MIR-19 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-19b-2

Paralogues

Hsa-Mir-19-P1a Hsa-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chrX: 134169683-134169748 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c chrX: 134169382-134169446 [-] UCSC Ensembl
Mir-92-P1c chrX: 134169544-134169604 [-] UCSC Ensembl
Mir-19-P2c chrX: 134169683-134169748 [-] UCSC Ensembl
Mir-17-P4c chrX: 134169812-134169872 [-] UCSC Ensembl
Mir-17-P2c chrX: 134170042-134170106 [-] UCSC Ensembl
Mir-17-P1c chrX: 134170208-134170266 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

GAAUAUUCAAAGACAUUGCUACUUACAAUUAGUUUUGCAGGUUUGCAUUUCAGCGUAUAUAUGUAUAUGUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUAAUGUGUGCUUCCUACGUCUGUG

Get precursor sequence

Structure

        10        20          30         40         50        60   
GAAUAUUCAAAGACAUUGCUAC--                 -  -|     UUU    GUAUAUAU 
                        UUACAAUUAGUUUUGCA GG UUUGCA   CAGC        \
                        AGUGUUAGUCAAAACGU CC AAACGU   GUCG        G
GUGUCUGCAUCCUUCGUGUGUAAU                 A  U^     ---    GUGUAUAU 
    120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-19-P2c_5p*

mirBase accession

MIMAT0004492

Sequence

0- AGUUUUGCAGGUUUGCAUUUCAGC -24

Get sequence

Proposed targets

microrna.org: MIMAT0004492
TargetScanVert: hsa-miR-19b-2-5p
TargetMiner: hsa-miR-19b-2-5p
miRDB: MIMAT0004492

Mature sequence

Hsa-Mir-19-P2c_3p

mirBase accession

MIMAT0000074

Sequence

43- UGUGCAAAUCCAUGCAAAACUGA -66

Get sequence

Proposed targets

microrna.org: MIMAT0000074
TargetScanVert: hsa-miR-19b-3p
TargetMiner: hsa-miR-19b-3p
miRDB: MIMAT0000074