MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-19-P2c

Family name MIR-19 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-19-P1a  Gja-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cja-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Eca-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169856.1: 119403-119463 [-]
Clustered miRNAs
(< 50kb from Mir-19-P2c)		 Mir-92-P2c NW_015169856.1: 119070-119134 [-]
Mir-92-P1c NW_015169856.1: 119224-119288 [-]
Mir-19-P2c NW_015169856.1: 119403-119463 [-]
Mir-17-P4c NW_015169856.1: 119534-119595 [-]
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
AUGCAAGGAAGACUGUGCUGAUCUACAGUCCGUUUUGCAGGUUUGCAUCUCAGCUUGGUAUCUGAUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUAGUGAGCAGUAAAGGAUUUC
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Structure
        10         20         30         40         50        60
AUGCAAGGAAGACUGUG-   AU-        C        -  -|     UCU    UUGGU 
                  CUG   CUACAGUC GUUUUGCA GG UUUGCA   CAGC     A
                  GAU   GGUGUCAG CAAAACGU CC AAACGU   GUCG     U
CUUUAGGAAAUGACGAGU   GGU        U        A  U^     ---    UAGUC 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Gja-Mir-19-P2c_5p*
mirBase accessionNone
Sequence 
0- CGUUUUGCAGGUUUGCAUCUCAGC -24
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Mature sequence

Gja-Mir-19-P2c_3p
mirBase accessionNone
Sequence 
38- UGUGCAAAUCCAUGCAAAACUGA -61
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