Mir-433

MirGeneDB ID

Laf-Mir-433

Family name

MIR-433 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-433 Cfa-Mir-433 Cja-Mir-433 Cpo-Mir-433 Dno-Mir-433 Eca-Mir-433 Ete-Mir-433 Hsa-Mir-433 Mml-Mir-433 Mmr-Mir-433 Mmu-Mir-433 Ocu-Mir-433 Pab-Mir-433 Rno-Mir-433

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010036.1: 75663797-75663870 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-433)

Mir-136 GL010036.1: 75660902-75660957 [-] UCSC Ensembl
Mir-127 GL010036.1: 75662711-75662766 [-] UCSC Ensembl
Mir-433 GL010036.1: 75663797-75663870 [-] UCSC Ensembl
Mir-431 GL010036.1: 75664666-75664729 [-] UCSC Ensembl
Mir-337 GL010036.1: 75676529-75676588 [-] UCSC Ensembl
Mir-493 GL010036.1: 75678752-75678809 [-] UCSC Ensembl

Seed

UCAUGAU

Precursor
(pre-Mir +30nt flank)

GAAGAAGAAGACCCAAUGCCCGGGGAGAAGUACGGUGAGCCUGUCAUUAUUCAGAGAGGCUAGAUCCUCUGUGUUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGGUAGCGGCACCACACCGUGAAGG

Get precursor sequence

Structure

        10           20        30        40        50        60      
GAAGAAGAAGACCCAAU-  --| GG      GUA   U           U    AGAGAGGCUAGAU 
                  GC  CC  GGAGAA   CGG GAGCCUGUCAU AUUC             C
                  CG  GG  CCUCUU   GCU CUCGGGUAGUA UAGG             C
GGAAGUGCCACACCACGG  AU^ A-      GUG   C           C    AAGAGUUGUGUCU 
  130       120       110        100        90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Wh

Star sequence

Laf-Mir-433_5p* (predicted)

mirBase accession

None

Sequence

0- UACGGUGAGCCUGUCAUUAUUC -22

Get sequence

Mature sequence

Laf-Mir-433_3p (predicted)

mirBase accession

None

Sequence

52- AUCAUGAUGGGCUCCUCGGUGU -74

Get sequence