| MirGeneDB ID | Lch-Mir-130-P1d |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH128272.1: 328151-328212 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P1d) |
Mir-130-P2d
JH128272.1: 320519-320582 [-]
Ensembl
Mir-130-P1d JH128272.1: 328151-328212 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
GGAGCCCUUCCUCAGCACCCGAUGGCCUAGGCCCUUUUUGUGUUGUACUACUGGCCACUGAAGCUGUAGCAGUGCAAUAUUAAAAAGGGCAUUGGCUUUCGGCCACACAGCACGUGGCUCCUGet precursor sequence |
| Structure | 10 20 30 40 50 GGAGCCCUUCCUCAGCAC-- U UAG -| A GGCCACU CCGA GGCC GCCCUUUUU GUGUUGUACU CU \ GGCU UCGG CGGGAAAAA UAUAACGUGA GA G UCCUCGGUGCACGACACACC U UUA U^ C UGUCGAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-130-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCCUUUUUGUGUUGUACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P1d_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- CAGUGCAAUAUUAAAAAGGGCAU -62
Get sequence
|
