| MirGeneDB ID | Lch-Mir-130-P3b |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126567.1: 190727-190791 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P3b) |
Mir-130-P3b
JH126567.1: 190727-190791 [-]
Ensembl
Mir-130-P2b JH126567.1: 194120-194181 [-] Ensembl Mir-130-P1b JH126567.1: 194546-194608 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
AAUUUUUGCCUCUUGUUUCCAGAUCCUGGAACCCUAUCAAUGUUGCCUCUGCUGUGUAGAUGGCUGAGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGAAAAAACCAGUAUCAGAAUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAUUUUUGCCUCUUGUU-- UC ---| CU GUGUAGA UCCAGA CUGGAACCCUAU CAAUGUUGC CUGCU \ AGGUUU GAUUUUGGGAUA GUUAUAACG GAUGA U AUAAGACUAUGACCAAAAA GU UUC^ U- GAGUCGG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Lch-Mir-130-P3b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCCUAUCAAUGUUGCCUCUGCU -23
Get sequence
|
| Mature sequence | Lch-Mir-130-P3b_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence
|
