MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P3b

Family name MIR-130 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sha-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01005977.1: 175036-175100 [+]
Clustered miRNAs
(< 50kb from Mir-130-P3b)		 Mir-130-P1b BFAA01005977.1: 163281-163343 [+]
Mir-130-P2b BFAA01005977.1: 164715-164776 [+]
Mir-130-P3b BFAA01005977.1: 175036-175100 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CAGUUUUUCUUUUGAUGCUCAGGUACUGGGACCCUAUCGAUAUUGCCUCUGCUUUGUAGAUAGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUCAGUGUUUGGGAAUUGCAGCGGCCCGGCUU
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Structure
        10          20        30           40        50        60 
CAGUUUUUCUUUUGAUG--    GG     GG       ---|        CU     UUGUAGA 
                   CUCA  UACUG  ACCCUAU   CGAUAUUGC  CUGCU       \
                   GGGU  GUGAC  UGGGAUA   GUUAUAACG  GAUGA       U
UUCGGCCCGGCGACGUUAA    UU     UU       UUC^        U-     GUGUCGA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Sto-Mir-130-P3b_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCGAUAUUGCCUCUGCU -23
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Mature sequence

Sto-Mir-130-P3b_3p
mirBase accessionNone
Sequence 
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
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