MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P3a

Family name MIR-130 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3b  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01012481.1: 68285-68351 [+]
Clustered miRNAs
(< 50kb from Mir-130-P3a)		 Mir-130-P1a BFAA01012481.1: 61197-61254 [+]
Mir-130-P2a BFAA01012481.1: 61702-61763 [+]
Mir-130-P3a BFAA01012481.1: 68285-68351 [+]
Mir-130-P4a BFAA01012481.1: 69134-69193 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UGCUGAGGCGAGGCUACCCUUGGAGCUGGGACCCUAUCUAUAUUGCGUCUGCUUUGAAUUUAUCGCUUUAAGUAGUGCAAUAUCGCUUAUAGGGUUUCAGCCCGGGGUCCAAUCGUCUUUCAAGAGG
Get precursor sequence
Structure
        10           20        30           40        50        60  
UGCUGAGGCGAGGCUAC---      A    GG       CU---|       U     UUGAAUUU 
                    CCUUGG GCUG  ACCCUAU     AUAUUGCG CUGCU        \
                    GGGGCC CGAC  UGGGAUA     UAUAACGU GAUGA        A
GGAGAACUUUCUGCUAACCU      -    UU       UUCGC^       -     AUUUCGCU 
     120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Sto-Mir-130-P3a_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCUAUAUUGCGUCUGCU -23
Get sequence
Mature sequence

Sto-Mir-130-P3a_3p
mirBase accessionNone
Sequence 
42- UAGUGCAAUAUCGCUUAUAGGGUUU -67
Get sequence