MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-130-P3a

Family name MIR-130 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-130-P1a  Xtr-Mir-130-P1b  Xtr-Mir-130-P2a  Xtr-Mir-130-P2b  Xtr-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr1: 145396854-145396917 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3a)		 Mir-130-P4a chr1: 145394714-145394773 [-] UCSC Ensembl
Mir-130-P3a chr1: 145396854-145396917 [-] UCSC Ensembl
Mir-130-P2a chr1: 145402713-145402775 [-] UCSC Ensembl
Mir-130-P1a chr1: 145403558-145403616 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GGUUCCAGUGCCCUCAGCCUUAAGGAAGUGACCCUAUCAAUAUUGCCUCUGCUUUUGUGCUCGGAGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCCUUGAGACACCUUCUUUUUCCAACAA
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Structure
        10          20        30           40        50        60
GGUUCCAGUGCCCUCAGC--          U        ---|        CU     UUUGUG 
                    CUUAAGGAAG GACCCUAU   CAAUAUUGC  CUGCU      C
                    GAGUUCCUUU CUGGGAUA   GUUAUAACG  GAUGA      U
AACAACCUUUUUCUUCCACA          U        UUC^        U-     UGAGGC 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-130-P3a_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Xtr-Mir-130-P3a_3p
mirBase accessionNone
Sequence 
39- UAGUGCAAUAUUGCUUAUAGGGUCU -64
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