MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-130-P3a

Family name MIR-130 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1a  Cmi-Mir-130-P1b  Cmi-Mir-130-P2a  Cmi-Mir-130-P2b  Cmi-Mir-130-P3b  Cmi-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636069.1: 51521-51586 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3a)		 Mir-130-P4a KI636069.1: 50385-50445 [-] UCSC Ensembl
Mir-130-P3a KI636069.1: 51521-51586 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GGUGUGGAGCGGGUUACCCCGGCAGCUGAAACCCUAUCUAUAUUGCGUCUGCUUUGAAUUUCUGCCUUAAGUAGUGCAAUAUCGCUUAUAGGGUUUUGGCCCCGGGUUCGAGCAUCAAGAGCCGGG
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Structure
        10           20        30           40        50        60 
GGUGUGGAGCGGGUUAC---     CA  UG         CU---|       U     UUGAAUU 
                    CCCGG  GC  AAACCCUAU     AUAUUGCG CUGCU       U
                    GGGCC  CG  UUUGGGAUA     UAUAACGU GAUGA       C
GGGCCGAGAACUACGAGCUU     C-  GU         UUCGC^       -     AUUCCGU 
    120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-130-P3a_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCUAUAUUGCGUCUGCU -23
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Mature sequence

Cmi-Mir-130-P3a_3p
mirBase accessionNone
Sequence 
41- UAGUGCAAUAUCGCUUAUAGGGUUU -66
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