MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-130-P2a

Family name MIR-130 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1a  Cmi-Mir-130-P1b  Cmi-Mir-130-P2b  Cmi-Mir-130-P3a  Cmi-Mir-130-P3b  Cmi-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 AAVX02053842.1: 894-951 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)		 Mir-130-P2a AAVX02053842.1: 894-951 [-] UCSC Ensembl
Mir-130-P1a AAVX02053842.1: 1561-1620 [-] UCSC Ensembl
Seed CUGACGA
Precursor
(pre-Mir +30nt flank)		 
GGUCAGGGUUGGUUGGCUGUUGUCGGAGGCUCUGACGAUAUUGCACUACUGUCCUCACCGUUAAGCAGUGCAAUAGUAUUGUCAAAGCGUCAGGCAACAGAGAGCUUCGACAUACAAU
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Structure
        10          20        30        40           50       
GGUCAGGGUUGGUUGGC--       G  G   C         ---|     A  GUCCUC 
                   UGUUGUC GA GCU UGACGAUAU   UGCACU CU      \
                   ACAACGG CU CGA ACUGUUAUG   ACGUGA GA      A
UAACAUACAGCUUCGAGAG       A  G   A         AUA^     C  AUUGCC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-130-P2a_5p
mirBase accessionNone
Sequence 
0- UCUGACGAUAUUGCACUACU -20
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Co-mature sequence

Cmi-Mir-130-P2a_3p
mirBase accessionNone
Sequence 
35- CAGUGCAAUAGUAUUGUCAAAGC -58
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