MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-130-P1b

Family name MIR-130 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1a  Cmi-Mir-130-P2a  Cmi-Mir-130-P2b  Cmi-Mir-130-P3a  Cmi-Mir-130-P3b  Cmi-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636009.1: 735551-735612 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b KI636009.1: 735551-735612 [+] UCSC Ensembl
Mir-130-P2b KI636009.1: 739328-739389 [+] UCSC Ensembl
Mir-130-P3b KI636009.1: 742939-743003 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UCUGGAUGUCCUUUUGUCCGCUCGUCCACUGCCCUUUUUAUGUUGUACUACUAGUGAUAACAGAAAAAAGCAGUGCAAUAUUAAAAGGGCAUUGGCCGGCGACUAAAUCAAUUUGUUUCAAG
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Structure
        10           20        30        40        50        60
UCUGGAUGUCCUUUUGUC---|  U  U   C         U          A  AGUGAUA 
                     CGC CG CCA UGCCCUUUU AUGUUGUACU CU       A
                     GCG GC GGU ACGGGAAAA UAUAACGUGA GA       C
GAACUUUGUUUAACUAAAUCA^  -  C   U         U          C  AAAAAGA 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-130-P1b_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Cmi-Mir-130-P1b_3p
mirBase accessionNone
Sequence 
40- CAGUGCAAUAUUAAAAGGGCAU -62
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