MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-130-P1b

Family name MIR-130 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-130-P1a  Loc-Mir-130-P2a  Loc-Mir-130-P2b  Loc-Mir-130-P3a  Loc-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG22: 410006-410068 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b LG22: 410006-410068 [+] Ensembl
Mir-130-P2b LG22: 410146-410207 [+] Ensembl
Seed CCCCUUU
Precursor
(pre-Mir +30nt flank)		 
CCUGCAUCCAGACUGUCUUGUCUGUCCAGUGCCCCUUUUAUGUUGUACUACUGGUGACCCUGUAAAGAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGGGAUUGUGCCCGAGCUGGUCCCU
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Structure
        10        20          30        40        50        60 
CCUGCAUCCAGACUGUCUUG--|   U         C   U          A  GGUGACCC 
                      UCUG CCAGUGCCC UUU AUGUUGUACU CU        \
                      GGAC GGUUACGGG AAA UGUAACGUGA GA        U
UCCCUGGUCGAGCCCGUGUUAG^   C         A   U          C  AAGAAAUG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-130-P1b_5p
mirBase accessionNone
Sequence 
0- GCCCCUUUUAUGUUGUACUACU -22
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Co-mature sequence

Loc-Mir-130-P1b_3p
mirBase accessionNone
Sequence 
41- CAGUGCAAUGUUAAAAGGGCAU -63
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