MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P1b

Family name MIR-130 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01005977.1: 163281-163343 [+]
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b BFAA01005977.1: 163281-163343 [+]
Mir-130-P2b BFAA01005977.1: 164715-164776 [+]
Mir-130-P3b BFAA01005977.1: 175036-175100 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AACCUGAUGCCGUUUGUCCGUUCGUCCAGUGCCCUUUUUAUGUUGUACUACUAGUGAUAACAGAAAAAAAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCGACCAAGCCAAUGUUGCAGAUU
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Structure
        10           20        30        40        50        60 
AACCUGAUGCCGUUUGUC---|  UC U             U          A  AGUGAUAA 
                     CGU  G CCAGUGCCCUUUU AUGUUGUACU CU        \
                     GCG  C GGUUACGGGAAAA UAUAACGUGA GA        C
UUAGACGUUGUAACCGAACCA^  GU -             U          C  AAAAAAGA 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Sto-Mir-130-P1b_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Sto-Mir-130-P1b_3p
mirBase accessionNone
Sequence 
41- CAGUGCAAUAUUAAAAGGGCAU -63
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