| MirGeneDB ID | Lch-Mir-130-P1b |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P1b Ami-Mir-130-P1b Cli-Mir-130-P1b Cmi-Mir-130-P1b Cpi-Mir-130-P1b Dre-Mir-130-P1b1 Gga-Mir-130-P1b Gja-Mir-130-P1b Loc-Mir-130-P1b Mdo-Mir-130-P1b Mun-Mir-130-P1b Oan-Mir-130-P1b Pbv-Mir-130-P1b Sha-Mir-130-P1b Spt-Mir-130-P1b Sto-Mir-130-P1b Tgu-Mir-130-P1b Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xtr-Mir-130-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126567.1: 194546-194608 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P1b) |
Mir-130-P3b
JH126567.1: 190727-190791 [-]
Ensembl
Mir-130-P2b JH126567.1: 194120-194181 [-] Ensembl Mir-130-P1b JH126567.1: 194546-194608 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
GUCUUUUGGGUAAUGCUCUGCCUGUCCAGCGCCCUUUUUAUGUUGUACUACUGGUGACAAUAUAAUAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGUAAUUCUGUCCAUGCUACCAUCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GUCUUUUGGGUAAUGCUCUGC--| U C U A GGUGACAA CUG CCAG GCCCUUUU AUGUUGUACU CU \ GAC GGUU CGGGAAAA UGUAACGUGA GA U UCUACCAUCGUACCUGUCUUAAU^ C A U C AAAUAAUA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-130-P1b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCCUUUUUAUGUUGUACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P1b_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- CAGUGCAAUGUUAAAAGGGCAU -63
Get sequence
|
