MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P3c

Family name MIR-130 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P4a 
Orthologues Lch-Mir-130-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01048252.1: 939-1004 [-]
Clustered miRNAs
(< 50kb from Mir-130-P3c)		 Mir-130-P3c BFAA01048252.1: 939-1004 [-]
Mir-130-P1c BFAA01048252.1: 1890-1948 [-]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UUAGCCUGAAGCCUUUCCCGGUAGGCCGAGACCCUAUCAAUGUUGCCUCUGCUGUUCGGAUAUUCUCACAGUAGUGCAAUGUUGCUUAUAGGGUUCUGGACAGCGGGAGACCCUCGCGUCGGACAA
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Structure
        10          20        30           40        50        60 
UUAGCCUGAAGCCUUUC--  G  AGG   AG       ---|        CU     GUUCGGA 
                   CC GU   CCG  ACCCUAU   CAAUGUUGC  CUGCU       U
                   GG CG   GGU  UGGGAUA   GUUGUAACG  GAUGA       A
AACAGGCUGCGCUCCCAGA  G  ACA   CU       UUC^        U-     CACUCUU 
    120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Sto-Mir-130-P3c_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCAAUGUUGCCUCUGCU -23
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Mature sequence

Sto-Mir-130-P3c_3p
mirBase accessionNone
Sequence 
41- UAGUGCAAUGUUGCUUAUAGGGUUC -66
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