MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-130-P1a

Family name MIR-130 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1b  Cmi-Mir-130-P2a  Cmi-Mir-130-P2b  Cmi-Mir-130-P3a  Cmi-Mir-130-P3b  Cmi-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 AAVX02053842.1: 1561-1620 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a)		 Mir-130-P2a AAVX02053842.1: 894-951 [-] UCSC Ensembl
Mir-130-P1a AAVX02053842.1: 1561-1620 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UGUGUGUGUUAUUUAAGUCUGUUGUCCGGGGCCCUUUUCAUGUUGUACUACUGGGAAGUUGAGUUAAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGUCCUCUCCACCUACCCUACA
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Structure
        10          20        30        40        50         
UGUGUGUGUUAUUUAAGU--|     U    G        C          A  GGGAAG 
                    CUGUUG CCGG GCCCUUUU AUGUUGUACU CU      U
                    GACGGU GGUU CGGGAAAA UAUAACGUGA GA      U
ACAUCCCAUCCACCUCUCCU^     C    A        U          C  AUUGAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-130-P1a_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUCAUGUUGUACUACU -22
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Mature sequence

Cmi-Mir-130-P1a_3p
mirBase accessionNone
Sequence 
38- CAGUGCAAUAUUAAAAGGGCAU -60
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