MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-130-P1a2

Family name MIR-130 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-130-P1a1  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mal-Mir-130-P2b2  Mal-Mir-130-P3a1  Mal-Mir-130-P4a1 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xtr-Mir-130-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884763.1: 518377-518435 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a2)		 Mir-130-P1a2 KV884763.1: 518377-518435 [+] UCSC Ensembl
Mir-130-P2a2 KV884763.1: 518814-518876 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AGGCUGGUGGUGCCCAUGUUCUUGUCCGUUGCCCUUUUUCUGUUGCACUACUGGACAUUGAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGAUGAAACAGAGACCCACACUUUCC
Get precursor sequence
Structure
        10         20         30        40        50         
AGGCUGGUGGUGCCCAUG-   -|  U   U         UC         A  GGACAU 
                   UUC UUG CCG UGCCCUUUU  UGUUGCACU CU      \
                   AAG AGU GGU ACGGGAAAA  AUAACGUGA GA      U
CCUUUCACACCCAGAGACA   U^  C   U         UU         C  GUAGAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-130-P1a2_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUCUGUUGCACUACU -22
Get sequence
Mature sequence

Mal-Mir-130-P1a2_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence