| MirGeneDB ID | Spt-Mir-130-P1a |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-130-P1b Spt-Mir-130-P1c Spt-Mir-130-P2a Spt-Mir-130-P2b Spt-Mir-130-P3a Spt-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P1a Ami-Mir-130-P1a Cli-Mir-130-P1a Cmi-Mir-130-P1a Cpi-Mir-130-P1a Dre-Mir-130-P1a1 Dre-Mir-130-P1a2 Gga-Mir-130-P1a Gja-Mir-130-P1a Gmo-Mir-130-P1a1 Gmo-Mir-130-P1a2 Lch-Mir-130-P1a Loc-Mir-130-P1a Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mdo-Mir-130-P1a Mun-Mir-130-P1a Oan-Mir-130-P1a Pbv-Mir-130-P1a Sha-Mir-130-P1a Sto-Mir-130-P1a Tgu-Mir-130-P1a Tni-Mir-130-P1a2 Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xtr-Mir-130-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011180.1: 5867719-5867777 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P1a) |
Mir-130-P1a
QEPC01011180.1: 5867719-5867777 [+]
UCSC
Ensembl
Mir-130-P2a QEPC01011180.1: 5869034-5869096 [+] UCSC Ensembl Mir-130-P3a QEPC01011180.1: 5876074-5876137 [+] UCSC Ensembl Mir-130-P4a QEPC01011180.1: 5877745-5877805 [+] UCSC Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
UGGAGUCUCUGGAUCCUACUGUUGUCCAGAGCCCUUUUUCUGUUGUACUACUGGCAGUUAUGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGGAACAUUUGACUAACAGCCCGet precursor sequence |
| Structure | 10 20 30 40 50 UGGAGUCUCUGGAUCCUA--| U A UC A GGCAGU CUGUUG CCAG GCCCUUUU UGUUGUACU CU \ GACGGU GGUU CGGGAAAA AUAACGUGA GA U CCCGACAAUCAGUUUACAAG^ C A UU C GUAGUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Spt-Mir-130-P1a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCCUUUUUCUGUUGUACUACU -22
Get sequence
|
| Mature sequence | Spt-Mir-130-P1a_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence
|
