| MirGeneDB ID | Spt-Mir-130-P2a |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-130-P1a Spt-Mir-130-P1b Spt-Mir-130-P1c Spt-Mir-130-P2b Spt-Mir-130-P3a Spt-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011180.1: 5869034-5869096 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P2a) |
Mir-130-P1a
QEPC01011180.1: 5867719-5867777 [+]
UCSC
Ensembl
Mir-130-P2a QEPC01011180.1: 5869034-5869096 [+] UCSC Ensembl Mir-130-P3a QEPC01011180.1: 5876074-5876137 [+] UCSC Ensembl Mir-130-P4a QEPC01011180.1: 5877745-5877805 [+] UCSC Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
AGAAUGUCACGUUGGCUGCUGGUAUCGUUGGCUAUGACAAUGUUGCACUACUGUCUGCACAAAUAAAGCAGUGCAAUAAUAUUGUCAAAGCAUUUGGUUCCAGUCCUGGUACAUCCUUCCUGCGet precursor sequence |
| Structure | 10 20 30 40 50 AGAAUGUCACGUUGGCU-- U UUG A ---| A GUCUGC GCUGG AUCG GCU UGACAAUGU UGCACU CU A UGACC UGGU CGA ACUGUUAUA ACGUGA GA C CGUCCUUCCUACAUGGUCC U UUA A AUA^ C AAUAAA 120 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Spt-Mir-130-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUAUGACAAUGUUGCACUACU -22
Get sequence
|
| Mature sequence | Spt-Mir-130-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAGUGCAAUAAUAUUGUCAAAGCAU -63
Get sequence
|
