MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-130-P4a

Family name MIR-130 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1a  Cmi-Mir-130-P1b  Cmi-Mir-130-P2a  Cmi-Mir-130-P2b  Cmi-Mir-130-P3a  Cmi-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636069.1: 50385-50445 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P4a KI636069.1: 50385-50445 [-] UCSC Ensembl
Mir-130-P3a KI636069.1: 51521-51586 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CCUGGCGAUGGAGAUGCUCAGGCGCCUGCCGCUCUGUCAGUGUUGCGCUACUGUGGGACUGGUCGCUAGCAGUGCAAUAUUGAAAGAGCAUCAGUUGUCUUGAGGUGACCUCGACAACAUC
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Structure
        10          20        30        40        50          
CCUGGCGAUGGAGAUGC-  -|    C   CC     G             A  GUGGGAC 
                  UC AGGCG CUG  GCUCU UCAGUGUUGCGCU CU       \
                  AG UCUGU GAC  CGAGA AGUUAUAACGUGA GA       U
CUACAACAGCUCCAGUGG  U^    U   UA     A             C  UCGCUGG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-130-P4a_5p*
mirBase accessionNone
Sequence 
0- GCUCUGUCAGUGUUGCGCUACU -22
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Mature sequence

Cmi-Mir-130-P4a_3p
mirBase accessionNone
Sequence 
39- CAGUGCAAUAUUGAAAGAGCAU -61
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