Mir-130-P3a

MirGeneDB ID

Aca-Mir-130-P3a

Family name

MIR-130 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-454

Paralogues

Aca-Mir-130-P1a Aca-Mir-130-P1b Aca-Mir-130-P1c Aca-Mir-130-P2a Aca-Mir-130-P2b Aca-Mir-130-P4a

Orthologues

Ami-Mir-130-P3a Cli-Mir-130-P3a Cmi-Mir-130-P3a Cpi-Mir-130-P3a Dre-Mir-130-P3a1 Gga-Mir-130-P3a Gja-Mir-130-P3a Lch-Mir-130-P3a Loc-Mir-130-P3a Mal-Mir-130-P3a1 Mun-Mir-130-P3a Pbv-Mir-130-P3a Spt-Mir-130-P3a Sto-Mir-130-P3a Tgu-Mir-130-P3a Xla-Mir-130-P3a3 Xla-Mir-130-P3a4 Xtr-Mir-130-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL343282.1: 1189904-1189968 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3a)

Mir-130-P4a GL343282.1: 1188362-1188424 [-] UCSC Ensembl
Mir-130-P3a GL343282.1: 1189904-1189968 [-] UCSC Ensembl
Mir-130-P2a GL343282.1: 1200201-1200263 [-] UCSC Ensembl
Mir-130-P1a GL343282.1: 1201646-1201704 [-] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

CCCACCCCCUGUGAGAACUCUGAGGAUAAGACCCUAUCAAUAUUGCCUCUGCUUCUGUGCUGGAUUCAAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUGGGGAGGCGCUCUUCGUGGGAAG

Get precursor sequence

Structure

        10          20        30           40        50        60 
CCCACCCCCUGUGAGAA--   UG    U          ---|        CU     UCUGUGC 
                   CUC  AGGA AAGACCCUAU   CAAUAUUGC  CUGCU       \
                   GGG  UUCU UUCUGGGAUA   GUUAUAACG  GAUGA       U
GAAGGGUGCUUCUCGCGGA   GU    U          UUC^        U-     ACUUAGG 
   120       110       100        90        80         70