MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-130-P3a

Family name MIR-130 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1a  Gja-Mir-130-P1b  Gja-Mir-130-P1c  Gja-Mir-130-P2a  Gja-Mir-130-P2b  Gja-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015164679.1: 166819-166883 [+]
Clustered miRNAs
(< 50kb from Mir-130-P3a)		 Mir-130-P1a NW_015164679.1: 146373-146431 [+]
Mir-130-P2a NW_015164679.1: 147797-147855 [+]
Mir-130-P3a NW_015164679.1: 166819-166883 [+]
Mir-130-P4a NW_015164679.1: 168764-168825 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CAUCCAAUGUGUAUGAACCUUGAGGGUAAGACCCUAUCAAUAUUGCCUCUGCUUUUAUUCUGGGAUCGAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUGGGGAGGUUUCUUCAUGGAGAAA
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Structure
        10          20        30           40        50        60 
CAUCCAAUGUGUAUGAA--   UG    U          ---|        CU     UUUAUUC 
                   CCU  AGGG AAGACCCUAU   CAAUAUUGC  CUGCU       \
                   GGG  UUCU UUCUGGGAUA   GUUAUAACG  GAUGA       U
AAAGAGGUACUUCUUUGGA   GU    U          UUC^        U-     GCUAGGG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-130-P3a_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Gja-Mir-130-P3a_3p
mirBase accessionNone
Sequence 
40- UAGUGCAAUAUUGCUUAUAGGGUCU -65
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