Mir-130-P3b

MirGeneDB ID

Sha-Mir-130-P3b

Family name

MIR-130 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-454

Paralogues

Sha-Mir-130-P1a Sha-Mir-130-P1b Sha-Mir-130-P1c Sha-Mir-130-P2b Sha-Mir-130-P4a

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL856812.1: 2872514-2872578 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3b)

Mir-130-P1b GL856812.1: 2852996-2853058 [+] UCSC Ensembl
Mir-130-P2b GL856812.1: 2853994-2854055 [+] UCSC Ensembl
Mir-130-P3b GL856812.1: 2872514-2872578 [+] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

CAUUUCCUGUUGAUACUACCAGAUCCUAGAACCCUAUCGAUAUUGUCUCUGCUGUGUACAUAGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGAAAGAACAGUGGCCAGGCUG

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Structure

        10          20        30           40        50        60 
CAUUUCCUGUUGAUACUA--     UC            ---|        CU     GUGUACA 
                    CCAGA  CUAGAACCCUAU   CGAUAUUGU  CUGCU       \
                    GGUUU  GAUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACCGGUGACAAGAAA     GU            UUC^        U-     GUGUCGA 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-130-P3b_5p*

mirBase accession

None

Sequence

0- ACCCUAUCGAUAUUGUCUCUGCU -23

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Mature sequence

Sha-Mir-130-P3b_3p

mirBase accession

MIMAT0022815

Sequence

40- UAGUGCAAUAUUGCUUAUAGGGUUU -65

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