MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-130-P3b

Family name MIR-130 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-130-P1c  Pab-Mir-130-P2a  Pab-Mir-130-P2b  Pab-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054698.2: 56725892-56725956 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b)		 Mir-130-P2b CM054698.2: 56713673-56713734 [+] UCSC Ensembl
Mir-130-P3b CM054698.2: 56725892-56725956 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AAAAAAUUCUGUUUGUCACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGUGCAGGCUG
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Structure
        10          20        30           40        50        60 
AAAAAAUUCUGUUUGUCA--     UC            ---|        CU     GUGUAAA 
                    CCAGA  CUAGAACCCUAU   CAAUAUUGU  CUGCU       \
                    GGUUU  GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACGUGUAACAAGAAG     GU            UUC^        U-     GUCUUGA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-130-P3b_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACCCUAUCAAUAUUGUCUCUGCU -23
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Mature sequence

Pab-Mir-130-P3b_3p
mirBase accessionNone
Sequence 
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
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