| MirGeneDB ID | Lch-Mir-181-P1a |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-181-P1b Lch-Mir-181-P1c Lch-Mir-181-P2a Lch-Mir-181-P2b Lch-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127371.1: 200037-200097 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P1a) |
Mir-181-P2a
JH127371.1: 199853-199914 [-]
Ensembl
Mir-181-P1a JH127371.1: 200037-200097 [-] Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
UUCUUACAUUAUUAUUUGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUAGAAUACAUUGAAAACCACUGACCGUUGAUUGUACCCUGUAGCUAACUGUCAUCCUCCUUGUGGCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUCUUACAUUAUUAUUU- -| U UGA U CU A UUAGAAU GGUU GCU CAG ACA UCAACG GUCGGUG GU A UCAA CGA GUC UGU AGUUGC CAGUCAC CA C UCGGUGUUCCUCCUACUG U^ U CCA U -- - AAAGUUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-181-P1a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
|
| Star sequence | Lch-Mir-181-P1a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- ACCACUGACCGUUGAUUGUACC -61
Get sequence
|
