Mir-181-P1a1

MirGeneDB ID

Tni-Mir-181-P1a1

Family name

MIR-181 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-181a-1

Paralogues

Tni-Mir-181-P1b1 Tni-Mir-181-P1c1 Tni-Mir-181-P1c2 Tni-Mir-181-P2a1 Tni-Mir-181-P2b1 Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Xtr-Mir-181-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

1: 18565261-18565323 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1a1)

Mir-181-P2a1 1: 18565056-18565116 [-] UCSC Ensembl
Mir-181-P1a1 1: 18565261-18565323 [-] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

UUCGCCAUCAGGCCUGCGCUCGCCCCGGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCCAAAUUGGAAAAACCAUCGACCGUUGAUUGUACCCCGUGGCCGGCAUUUUAUCACCUAGCAUCU

Get precursor sequence

Structure

        10          20        30        40        50        60  
UUCGCCAUCAGGCCUGC--|  C   C   UGA   U      CU       A    GAGCCA 
                   GCU GCC CGG   ACA UCAACG  GUCGGUG GUUU      A
                   CGG CGG GCC   UGU AGUUGC  CAGCUAC CAAA      A
UCUACGAUCCACUAUUUUA^  C   U   CCA   U      --       -    AAGGUU 
 120       110       100        90          80         70