Mir-19-P1a

MirGeneDB ID

Loc-Mir-19-P1a

Family name

MIR-19 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-19-P2a Loc-Mir-19-P2d

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG17: 12376281-12376338 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1a)

Mir-17-P1a LG17: 12376014-12376074 [+] Ensembl
Mir-17-P2a LG17: 12376145-12376209 [+] Ensembl
Mir-19-P1a LG17: 12376281-12376338 [+] Ensembl
Mir-17-P4a LG17: 12376500-12376558 [+] Ensembl
Mir-19-P2a LG17: 12376619-12376681 [+] Ensembl
Mir-92-P1a LG17: 12376738-12376796 [+] Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UUUUAUGGGGUUUUUUUGCAGAUCUCUGCUAGUUUUGCAUAGUUGCACUACAAGAAAAAUUGAGUUGUGCAAAACUAUGCAAAACUGAUGGUGGCCUGCUUUAUCUCCACCUGUUUAA

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Structure

        10          20        30        40          50       
UUUUAUGGGGUUUUUUU--    AU U  GC              --|    U  AAGAA 
                   GCAG  C CU  UAGUUUUGCAUAGU  UGCAC AC     A
                   CGUC  G GG  GUCAAAACGUAUCA  ACGUG UG     A
AAUUUGUCCACCUCUAUUU    CG U  UA              AA^    U  AGUUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-19-P1a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAUAGUUGCACUAC -21

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Mature sequence

Loc-Mir-19-P1a_3p

mirBase accession

None

Sequence

35- UGUGCAAAACUAUGCAAAACUGA -58

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