MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1990-P2

Family name MIR-1990 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold264: 40660-40717 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1990-P2)		 Mir-1990-P2 scaffold264: 40660-40717 [+] Ensembl
Mir-1986 scaffold264: 41066-41123 [+] Ensembl
Seed GGGACUA
Precursor
(pre-Mir +30nt flank)		 
CGGAUACCCUCUAGUUUGUGGCUCGUGGGCAGUAAGUUGAUGGGGUCCCAGGUUGUGAGGAAUUCCCGGGACUACGUCAACUACUUGCUUAAGUGCUACUCAUCUCGUCAAAAUUUGC
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Structure
        10          20        30         40        50        
CGGAUACCCUCUAGUUU--     UCG     -|   A       GG     A  UUGUG 
                   GUGGC   UGGGC AGUA GUUGAUG  GUCCC GG     A
                   CAUCG   AUUCG UCAU CAACUGC  CAGGG CC     G
CGUUUAAAACUGCUCUACU     UGA     U^   -       AU     C  UUAAG 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-1990-P2_5p*
mirBase accessionNone
Sequence 
0- AGUAAGUUGAUGGGGUCCCAGG -22
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Mature sequence

Mgi-Mir-1990-P2_3p
mirBase accessionNone
Sequence 
36- CGGGACUACGUCAACUACUUGC -58
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