MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-87-P2

Family name MIR-87 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-87-P1 
Orthologues Aae-Mir-87-P2  Aga-Mir-87-P2  Bge-Mir-87-P2a  Bge-Mir-87-P2b  Cbr-Mir-87-o2  Cel-Mir-87-o2  Csc-Mir-87-P2k  Csc-Mir-87-P2l  Cte-Mir-87-P2  Dan-Mir-87-P2-v1  Dgr-Mir-87-P2  Dlo-Mir-87-P2  Dme-Mir-87-P2-v1  Dmo-Mir-87-P2-v1  Dsi-Mir-87-P2-v1  Dya-Mir-87-P2-v1  Gpa-Mir-87-P2-v1  Gsp-Mir-87  Hme-Mir-87-P2  Hru-Mir-87-P2  Isc-Mir-87-P2  Lan-Mir-87-P2  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j  Ofu-Mir-87-P2  Pau-Mir-87-P2  Pve-Mir-87-P2  Sne-Mir-87  Snu-Mir-87-P2  Tca-Mir-87-P2 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold1600: 146061-146122 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-P2)		 Mir-87-P1 scaffold1600: 144750-144808 [+] Ensembl
Mir-87-P2 scaffold1600: 146061-146122 [+] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)		 
GUGGUCAACAAUUUCUGUCACUAGCCUGGUACGCCUGUUAUUUUGACUCAUACCUUAUAUAUUUGUACAGGUGAGCAAAGUUUCAGGUGUGUUAGUCUGUGGCCAUACAGCGCUGGAACCUU
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Structure
        10           20        30        40        50        60  
GUGGUCAACAAUUUCUG---|   U  C  GG        UU      A   AU    UAUAUA 
                    UCAC AG CU  UACGCCUG  AUUUUG CUC  ACCU      \
                    GGUG UC GA  GUGUGGAC  UGAAAC GAG  UGGA      U
UUCCAAGGUCGCGACAUACC^   -  U  UU        UU      -   --    CAUGUU 
120       110       100         90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-87-P2_5p*
mirBase accessionNone
Sequence 
0- ACGCCUGUUAUUUUGACUCAUACCU -25
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Mature sequence

Mgi-Mir-87-P2_3p
mirBase accessionNone
Sequence 
40- GUGAGCAAAGUUUCAGGUGUGU -62
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