MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-87-P1

Family name MIR-87 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-87-P2 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Csc-Mir-87-P1k1  Csc-Mir-87-P1k2  Csc-Mir-87-P1l  Cte-Mir-87-P1  Dgr-Mir-87-P1  Dlo-Mir-87-P1  Gsp-Mir-87  Hru-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Lpo-Mir-87-P1c  Lpo-Mir-87-P1d  Lpo-Mir-87-P1e  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j  Ofu-Mir-87-P1  Pau-Mir-87-P1  Pve-Mir-87-P1  Sne-Mir-87  Snu-Mir-87-P1  Tca-Mir-87-P1 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold1600: 144750-144808 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-P1)		 Mir-87-P1 scaffold1600: 144750-144808 [+] Ensembl
Mir-87-P2 scaffold1600: 146061-146122 [+] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)		 
AGUUUUUGACUACAAUGUUGUGUGGUGGACGGGCCCGAAAUUUUGGCUCAAACCUCUGAAUUAUCAGGUGAGCAAAGUUUUUGGGUGGUCUGCAGGCAACGCAAACAUCAGCAAGAAUC
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Structure
        10           20        30        40        50        60
AGUUUUUGACUACAAUG---|   G G UG   GG        U   G    AA    CUGA 
                    UUGU U G  GAC  GCCCGAAA UUU GCUC  ACCU    A
                    AACG A C  CUG  UGGGUUUU GAA CGAG  UGGA    U
CUAAGAACGACUACAAACGC^   G - GU   G-        U   A    --    CUAU 
       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-87-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGCCCGAAAUUUUGGCUCAAACCU -25
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Mature sequence

Mgi-Mir-87-P1_3p
mirBase accessionNone
Sequence 
37- GUGAGCAAAGUUUUUGGGUGGU -59
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