MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-87-P1e

Family name MIR-87 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-87-P1c  Lpo-Mir-87-P1d  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Cte-Mir-87-P1  Dgr-Mir-87-P1  Dlo-Mir-87-P1  Gsp-Mir-87  Hru-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Mgi-Mir-87-P1  Ofu-Mir-87-P1  Pau-Mir-87-P1  Pve-Mir-87-P1  Sne-Mir-87  Snu-Mir-87-P1  Tca-Mir-87-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665700.1: 1212340-1212400 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-P1e)		 Mir-87-P1e NW_013665700.1: 1212340-1212400 [+] Ensembl
Mir-87-P2e NW_013665700.1: 1213267-1213325 [+] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)		 
UUUAAUUAACGUAUCAUCUGUCAACCUUAUGUGCCCGAAACUUUGACUCAACCUGUGUACGUUUAACAGGUGAGCAAAGUUUCAGGUGUGUCGGGUUGGCUAAGAAGCUGCGAUGUCCAAG
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Structure
        10          20        30        40        50        60 
UUUAAUUAACGUAUCAUCU--|       U   UG  C         A    A   GUGUAC 
                     GUCAACCU AUG  CC GAAACUUUG CUCA CCU      \
                     CGGUUGGG UGU  GG CUUUGAAAC GAGU GGA      G
GAACCUGUAGCGUCGAAGAAU^       C   GU  A         -    -   CAAUUU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-87-P1e_5p*
mirBase accessionNone
Sequence 
0- GUGCCCGAAACUUUGACUCAACCU -24
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Mature sequence

Lpo-Mir-87-P1e_3p
mirBase accessionNone
Sequence 
39- GUGAGCAAAGUUUCAGGUGUGU -61
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