MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-489

Family name MIR-489 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xla-Mir-489-P1-v1  Xla-Mir-489-P2-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(oryCun2_add)		 chr10: 35345574-35345633 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)		 Mir-489 chr10: 35345574-35345633 [+] UCSC Ensembl
Mir-653 chr10: 35346249-35346307 [+] UCSC Ensembl
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
UGCUUGACUACCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGUGCCAUUCACUUGAACCUUUAGGGGUGACAUCACAUAUACGGUGGCUAAACUGCUACAAGGGACAACGAGUAAGUG
Get precursor sequence
Structure
        10          20        30        40        50         
UGCUUGACUACCUGUUG--|      C     GG              C     ACUUGA 
                   GUGGCAG UUGGU  UCGUAUGUGUGGUG CAUUC      A
                   CAUCGUC AAUCG  GGCAUAUACACUAC GUGGG      C
GUGAAUGAGCAACAGGGAA^      A     GU              A     GAUUUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-489_5p* (predicted)
mirBase accessionMIMAT0048477
Sequence 
0- GGUCGUAUGUGUGGUGCCAUUC -22
Get sequence
Mature sequence

Ocu-Mir-489_3p
mirBase accessionMIMAT0048478
Sequence 
38- GUGACAUCACAUAUACGGUGGC -60
Get sequence