MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-489

Family name MIR-489 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xla-Mir-489-P1-v1  Xla-Mir-489-P2-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(rn6)		 chr4: 28659547-28659606 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)		 Mir-653 chr4: 28658901-28658959 [-] UCSC Ensembl
Mir-489 chr4: 28659547-28659606 [-] UCSC Ensembl
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
AUCUGCUGACUGCUACAGUGGCAGCUUGGUUGUCGUAUGCGUGAUGACACGUUCUCGUGUAUUCCAGAAUGACAUCACAUAUAUGGCAGCUAAACUGUUACAGGAACAACAAGUAAUAUU
Get precursor sequence
Structure
        10          20        30        40        50         
AUCUGCUGACUGCUACA--|      C              C      A  CGUUCUCGU 
                   GUGGCAG UUGGUUGUCGUAUG GUGAUG CA         G
                   CAUUGUC AAUCGACGGUAUAU CACUAC GU         U
UUAUAAUGAACAACAAGGA^      A              A      A  AAGACCUUA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Rno-Mir-489_5p*
mirBase accessionMIMAT0017196
Sequence 
0- UGUCGUAUGCGUGAUGACACGU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-489-5p
miRDB: MIMAT0017196
Mature sequence

Rno-Mir-489_3p
mirBase accessionMIMAT0003113
Sequence 
38- AUGACAUCACAUAUAUGGCAGC -60
Get sequence
Proposed targets microrna.org: MIMAT0003113
TargetScanVert: rno-miR-489-3p
miRDB: MIMAT0003113