MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-770

Family name MIR-770 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-770  Eca-Mir-770  Hsa-Mir-770  Mml-Mir-770  Mmr-Mir-770  Mmu-Mir-770  Rno-Mir-770 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105276468-105276529 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-770)		 Mir-770 CM054694.2: 105276468-105276529 [+] UCSC Ensembl
Mir-493 CM054694.2: 105293438-105293499 [+] UCSC Ensembl
Mir-337 CM054694.2: 105300631-105300690 [+] UCSC Ensembl
Mir-431 CM054694.2: 105307145-105307208 [+] UCSC Ensembl
Mir-433 CM054694.2: 105308016-105308089 [+] UCSC Ensembl
Mir-127 CM054694.2: 105309120-105309175 [+] UCSC Ensembl
Mir-432 CM054694.2: 105310618-105310686 [+] UCSC Ensembl
Mir-136 CM054694.2: 105310838-105310893 [+] UCSC Ensembl
Seed CCAGUAC
Precursor
(pre-Mir +30nt flank)		 
AUUCAUGUGUCAGGAGCCACCUUCCGAGCCUCCAGUACCACGUGUCAGGGCCACAUGAGCUGGGCCUCGUGGGCCUGAUGUGGUGCUGGGGCCUCAGGGGUCUGCUCUUCUUCUCUUUCAGA
Get precursor sequence
Structure
        10           20        30        40        50        60 
AUUCAUGUGUCAGGAGCC---|    CC   C            GU      G    AUGAGC 
                     ACCUU  GAG CUCCAGUACCAC  GUCAGG CCAC      U
                     UGGGG  CUC GGGGUCGUGGUG  UAGUCC GGUG      G
AGACUUUCUCUUCUUCUCGUC^    A-   C            --      G    CUCCGG 
120       110       100         90        80          70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut is -3 relative to the murids and Microcebus.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-770_5p
mirBase accessionNone
Sequence 
0- UCCAGUACCACGUGUCAGGGCCACA -25
Get sequence
Star sequence

Pab-Mir-770_3p*
mirBase accessionNone
Sequence 
39- UGGGCCUGAUGUGGUGCUGGGGC -62
Get sequence