Mir-92-P1a

MirGeneDB ID

Pab-Mir-92-P1a

Family name

MIR-92 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-92-P1c Pab-Mir-92-P1d Pab-Mir-92-P2a Pab-Mir-92-P2c Pab-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054693.2: 97462992-97463050 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-17-P1a CM054693.2: 97462286-97462345 [+] UCSC Ensembl
Mir-17-P2a CM054693.2: 97462424-97462488 [+] UCSC Ensembl
Mir-19-P1a CM054693.2: 97462572-97462629 [+] UCSC Ensembl
Mir-17-P4a CM054693.2: 97462740-97462798 [+] UCSC Ensembl
Mir-19-P2a CM054693.2: 97462875-97462935 [+] UCSC Ensembl
Mir-92-P1a CM054693.2: 97462992-97463050 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

AGUAAGGGAAACUCAAACCCCUUUCUACACAGGUUGGGAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGGUGGGGAUUGUGACCAGAAGAU

Get precursor sequence

Structure

        10          20        30        40        50         
AGUAAGGGAAACUCAAA-  -| UUU  AC            C   U        GUGUU 
                  CC CC   CU  ACAGGUUGGGAU GGU GCAAUGCU     U
                  GG GG   GA  UGUCCGGCCCUG UCA CGUUAUGG     C
UAGAAGACCAGUGUUAGG  U^ UUU  GU            U   -        UAUGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-92-P1a_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUUGGGAUCGGUUGCAAUGCU -23

Get sequence

Mature sequence

Pab-Mir-92-P1a_3p

mirBase accession

None

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence