MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1986

Family name MIR-1986 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1986  Cte-Mir-1986  Eba-Mir-1986  Efe-Mir-1986  Hru-Mir-1986-P1  Hru-Mir-1986-P2  Lan-Mir-1986  Lgi-Mir-1986  Lhy-Mir-1986  Mgi-Mir-1986  Mom-Mir-1986  Npo-Mir-1986  Obi-Mir-1986  Ofu-Mir-1986  Ovu-Mir-1986  Pve-Mir-1986-P3  Pve-Mir-1986-P4  Pve-Mir-1986-P5  Rph-Mir-1986  War-Mir-1986 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000010.1: 42047758-42047813 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1986)		 Mir-2692 JAPTHN010000010.1: 42044738-42044800 [+] Ensembl
Mir-1990-P2-as JAPTHN010000010.1: 42046322-42046378 [-] Ensembl
Mir-1990-P2 JAPTHN010000010.1: 42046324-42046380 [+] Ensembl
Mir-1986 JAPTHN010000010.1: 42047758-42047813 [+] Ensembl
Seed AAGGAUC
Precursor
(pre-Mir +30nt flank)		 
CUAUUUCCUUCCUGACCAAUCUGCUGCAUUCAAGGAUCCUGGGGAAGCCCCCUUCCAUCAAUGGUGGAUUUCCCAUGAUCCGUAACUGUAGUCAGUUUGAGCCUUCUAAAAUGACG
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Structure
        10        20          30        40        50       
CUAUUUCCUUCCUGACCAAU-   -|    UUCAA     C       G  C  UUCC 
                     CUG CUGCA     GGAUC UGGGGAA CC CC    A
                     GAC GAUGU     CCUAG ACCCUUU GG GG    U
GCAGUAAAAUCUUCCGAGUUU   U^    CAAUG     U       A  U  UAAC 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1986_5p
mirBase accessionNone
Sequence 
0- CAAGGAUCCUGGGGAAGCCCCC -22
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Co-mature sequence

Pdu-Mir-1986_3p
mirBase accessionNone
Sequence 
34- UGGAUUUCCCAUGAUCCGUAAC -56
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