Mir-17-P3g

MirGeneDB ID

Pma-Mir-17-P3g

Family name

MIR-17 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-17b

Paralogues

Pma-Mir-17-P1g Pma-Mir-17-P2g Pma-Mir-17-P2h Pma-Mir-17-P3h-v1 Pma-Mir-17-P4g Pma-Mir-17-P4h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046115.1: 749682-749742 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P3g)

Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GGACUCAAGCCUGCUGUGGGCGUGCAUUGUUAAAGUGCAGAUAGUGGUAGUUGGUCCUAAAAAUGACAGCUACUCUAUUUACACUUUAAACACUGUGCGGUCCCAAUCCCCUCUGUCGCCU

Get precursor sequence

Structure

        10         20          30        40        50          
GGACUCAAGCCUGCUGU-   -  UG  U  -|       C      U       GGUCCUA 
                  GGG CG  CA UG UUAAAGUG AGAUAG GGUAGUU       \
                  CCU GC  GU AC AAUUUCAC UUUAUC UCAUCGA       A
UCCGCUGUCUCCCCUAAC   G  GU  C  A^       A      -       CAGUAAA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-17-P3g_5p

mirBase accession

MIMAT0019385

Sequence

0- UAAAGUGCAGAUAGUGGUAGUU -22

Get sequence

Star sequence

Pma-Mir-17-P3g_3p* (predicted)

mirBase accession

None

Sequence

39- CUACUCUAUUUACACUUUAAAC -61

Get sequence