Mir-19-P2g

MirGeneDB ID

Pma-Mir-19-P2g

Family name

MIR-19 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-19b

Paralogues

Pma-Mir-19-P1g Pma-Mir-19-P1h Pma-Mir-19-P2h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046115.1: 752202-752261 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2g)

Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

AACGUUUGCACCCUUCAUGCUCUCCCUGCCAGUUUUGCAUGUUUGCUGUCGGCUUGUCAAAAUGUGCUGUGCAAAUCCAUGCAAAACUGACGGUGAGUGCACCUCCGCUGACUGCCCACA

Get precursor sequence

Structure

        10          20        30        40          50         
AACGUUUGCACCCUUCA--   U   C   C            --|    UGU    UUGUC 
                   UGC CUC CUG CAGUUUUGCAUG  UUUGC   CGGC     A
                   ACG GAG GGC GUCAAAACGUAC  AAACG   GUCG     A
ACACCCGUCAGUCGCCUCC   U   U   A            CU^    U--    UGUAA 
.       110       100        90        80        70          60