MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-30-P1o3b

Family name MIR-30 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-30a
Paralogues Pma-Mir-30-P1o2  Pma-Mir-30-P1o3a  Pma-Mir-30-P1o4  Pma-Mir-30-P1o5  Pma-Mir-30-P2o3  Pma-Mir-30-P2o4  Pma-Mir-30-P2o5 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046095.1: 8724552-8724613 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1o3b)		 Mir-30-P1o3a NC_046095.1: 8723764-8723824 [+] UCSC Ensembl
Mir-30-P1o3b NC_046095.1: 8724552-8724613 [+] UCSC Ensembl
Mir-30-P2o3 NC_046095.1: 8724827-8724889 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
CGUUGGACAAGAACUGGCAGUGUGCACAUCUGUAAACAUCCUCGACUGGAAGCCCGUGCUUUGACAAGUGCUUUUAGUCGGAUGUUUGCGUCUGUCUCCUGCUCCUGUGCUUCACUCAACGU
Get precursor sequence
Structure
        10            20        30        40        50        60 
CGUUGGACAAGAACUGG----|  UGUGC   UC           UC          CCGUGCU 
                     CAG     ACA  UGUAAACAUCC  GACUGGAAGC       U
                     GUC     UGU  GCGUUUGUAGG  CUGAUUUUCG       U
UGCAACUCACUUCGUGUCCUC^  CUC--   CU           --          UGAACAG 
120       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-30-P1o3b_5p
mirBase accessionMIMAT0019422
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCC -24
Get sequence
Star sequence

Pma-Mir-30-P1o3b_3p*
mirBase accessionMIMAT0019423
Sequence 
40- CUUUUAGUCGGAUGUUUGCGUC -62
Get sequence