MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-30-P1o5

Family name MIR-30 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-30b
Paralogues Pma-Mir-30-P1o2  Pma-Mir-30-P1o3a  Pma-Mir-30-P1o3b  Pma-Mir-30-P1o4  Pma-Mir-30-P2o3  Pma-Mir-30-P2o4  Pma-Mir-30-P2o5 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046083.1: 11307703-11307768 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1o5)		 Mir-30-P2o5 NC_046083.1: 11295448-11295510 [-] UCSC Ensembl
Mir-30-P1o5 NC_046083.1: 11307703-11307768 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UCCGCGCACAGCAAUGGACAGGGUGGGAGCUGUAAACAUCCCUGACUGGAAGCUGGGAGCACUUGCUGCGGCAGCUUUCGCCCGGAUGUUUGCUGCUGCCAUCUGUCAAGGGCUUCAAGGAGAAGC
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Structure
        10           20        30        40        50        60   
UCCGCGCACAGCAAUGG---|    G   G   U          CUGAC        GGGAGCAC 
                    ACAGG UGG AGC GUAAACAUCC     UGGAAGCU        U
                    UGUCU ACC UCG CGUUUGUAGG     GCUUUCGA        U
CGAAGAGGAACUUCGGGAAC^    -   G   U          CCC--        CGGCGUCG 
    120       110        100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-30-P1o5_5p
mirBase accessionMIMAT0019424
Sequence 
0- UGUAAACAUCCCUGACUGGAAGCU -24
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Star sequence

Pma-Mir-30-P1o5_3p*
mirBase accessionNone
Sequence 
44- CUUUCGCCCGGAUGUUUGCUGC -66
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