MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-30-P2o4

Family name MIR-30 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-30f-1
Paralogues Pma-Mir-30-P1o2  Pma-Mir-30-P1o3a  Pma-Mir-30-P1o3b  Pma-Mir-30-P1o4  Pma-Mir-30-P1o5  Pma-Mir-30-P2o3  Pma-Mir-30-P2o5 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046080.1: 2700975-2701036 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2o4)		 Mir-30-P2o4 NC_046080.1: 2700975-2701036 [-] UCSC Ensembl
Mir-30-P1o4 NC_046080.1: 2710055-2710122 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GUGCCCUUUUUGACUAUGAGGCUCAGUCAAUGUAAACACCCUACACUCUCAGCUGUGCGCCAUUGGUUAGCUGGGAGUGGGGUGUUUAUGUUGACUGCCUUAAGCAAGCUGCACAAACUGCA
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Structure
        10            20        30        40        50        60 
GUGCCCUUUUUGACUAU----|    UC                 UA           GUGCGC 
                     GAGGC  AGUCAAUGUAAACACCC  CACUCUCAGCU      C
                     UUCCG  UCAGUUGUAUUUGUGGG  GUGAGGGUCGA      A
ACGUCAAACACGUCGAACGAA^    --                 --           UUGGUU 
120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-30-P2o4_5p
mirBase accessionMIMAT0019430
Sequence 
0- UGUAAACACCCUACACUCUCAGCU -24
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Star sequence

Pma-Mir-30-P2o4_3p*
mirBase accessionNone
Sequence 
40- CUGGGAGUGGGGUGUUUAUGUU -62
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