Mir-132-P1

MirGeneDB ID

Rno-Mir-132-P1

Family name

MIR-132 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-132

Paralogues

Rno-Mir-132-P2

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1a Dre-Mir-132-P1b Ebu-Mir-132-P1e Ebu-Mir-132-P1f Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1a Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1a Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1a Tni-Mir-132-P1b Xla-Mir-132-P1c Xla-Mir-132-P1d Xtr-Mir-132-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr10: 62015017-62015074 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-132-P1)

Mir-132-P2 chr10: 62014733-62014794 [+] UCSC Ensembl
Mir-132-P1 chr10: 62015017-62015074 [+] UCSC Ensembl

Seed

AACAGUC

Precursor
(pre-Mir +30nt flank)

UGAAAGCCCCGCCCCCGCGUCUCCAGGGCAACCGUGGCUUUCGAUUGUUACUGUGGGAACCGGAGGUAACAGUCUACAGCCAUGGUCGCCCCGCAGCACGCCCACGCUCCCCACCACU

Get precursor sequence

Structure

        10         20         30        40        50        
UGAAAGCCCCGCCCCCG-   -| CCA    A         UUC          GUGGG 
                  CGU CU   GGGC ACCGUGGCU   GAUUGUUACU     A
                  GCA GA   CCCG UGGUACCGA   CUGACAAUGG     A
UCACCACCCCUCGCACCC   C^ CGC    C         CAU          AGGCC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-132-P1_5p*

mirBase accession

MIMAT0017123

Sequence

0- ACCGUGGCUUUCGAUUGUUACU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-132-5p
miRDB: MIMAT0017123

Mature sequence

Rno-Mir-132-P1_3p

mirBase accession

MIMAT0000838

Sequence

36- UAACAGUCUACAGCCAUGGUCG -58

Get sequence

Proposed targets

microrna.org: MIMAT0000838
TargetScanVert: rno-miR-132-3p
miRDB: MIMAT0000838