Mir-19-P2a

MirGeneDB ID

Sha-Mir-19-P2a

Family name

MIR-19 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-19b

Paralogues

Sha-Mir-19-P1a Sha-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL849858.1: 3486529-3486590 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a)

Mir-92-P1a GL849858.1: 3486412-3486470 [-] UCSC Ensembl
Mir-19-P2a GL849858.1: 3486529-3486590 [-] UCSC Ensembl
Mir-17-P4a GL849858.1: 3486664-3486722 [-] UCSC Ensembl
Mir-19-P1a GL849858.1: 3486833-3486890 [-] UCSC Ensembl
Mir-17-P2a GL849858.1: 3486975-3487039 [-] UCSC Ensembl
Mir-17-P1a GL849858.1: 3487119-3487179 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

AACUUUUAAUUUAAGCACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGAUAUUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGAAAGUCAGUAGAAAAAAA

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Structure

        10         20         30         40         50        60
AACUUUUAAUUUAAGCA- UG  -                 -  -|     UC    UGUAUG 
                  C  UU CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      A
                  G  GG GGUGUCAGUCAAAACGU CC AAACGU  GUCG      U
AAAAAAAGAUGACUGAAA GU  U                 A  U^     --    UCUUUA 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-19-P2a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Mature sequence

Sha-Mir-19-P2a_3p

mirBase accession

MIMAT0022809

Sequence

39- UGUGCAAAUCCAUGCAAAACUGA -62

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