MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-19-P2a

Family name MIR-19 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1c  Cmi-Mir-19-P2b  Cmi-Mir-19-P2c  Cmi-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635908.1: 307499-307558 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a)		 Mir-17-P1a KI635908.1: 306927-306985 [+] UCSC Ensembl
Mir-17-P2a KI635908.1: 307076-307140 [+] UCSC Ensembl
Mir-19-P1a-v1 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-19-P1a-v2 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-17-P4a KI635908.1: 307386-307446 [+] UCSC Ensembl
Mir-19-P2a KI635908.1: 307499-307558 [+] UCSC Ensembl
Mir-92-P1a KI635908.1: 307621-307678 [+] UCSC Ensembl
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
UUUAUUUGGUAGAUAAAAACUUCUCUAGUUAGUUUUGCAGGGUUGCAUCCAGCUGUUACAGAUUUGCUGUGCAAAUCCAUGCAAAACUGACUAUGGUGGUGAAGAUGCAACAGGUGUCUA
Get precursor sequence
Structure
        10          20        30         40         50         
UUUAUUUGGUAGAUAAAA--   U  C              -   -|    UC    UGUUA 
                    ACU CU UAGUUAGUUUUGCA GGG UUGCA  CAGC     C
                    UGG GG AUCAGUCAAAACGU CCU AACGU  GUCG     A
AUCUGUGGACAACGUAGAAG   U  U              A   A^    --    UUUAG 
.       110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-19-P2a_5p*
mirBase accessionNone
Sequence 
0- AGUUUUGCAGGGUUGCAUCCAGC -23
Get sequence
Mature sequence

Cmi-Mir-19-P2a_3p
mirBase accessionNone
Sequence 
37- UGUGCAAAUCCAUGCAAAACUGA -60
Get sequence