MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P4a

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635908.1: 307386-307446 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)		 Mir-17-P1a KI635908.1: 306927-306985 [+] UCSC Ensembl
Mir-17-P2a KI635908.1: 307076-307140 [+] UCSC Ensembl
Mir-19-P1a-v1 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-19-P1a-v2 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-17-P4a KI635908.1: 307386-307446 [+] UCSC Ensembl
Mir-19-P2a KI635908.1: 307499-307558 [+] UCSC Ensembl
Mir-92-P1a KI635908.1: 307621-307678 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UGACCAACAUUAUAUUAGCCAAAGCAAUAAUAAAGUGCUUAUAGUGCAGGUAGUGUUUAUAGUAAUCUACUGCAAUAUGAGCACUUGAAGUACUGCUGGCUAUUGAGCUACAUUUUAUUUG
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Structure
        10            20        30         40        50          
UGACCAACAUUAUAUUA----|   AA   A  AUA-           G     G   UGUUUA 
                     GCCA  GCA UA    AAGUGCUUAUA UGCAG UAG      \
                     CGGU  CGU AU    UUCACGAGUAU ACGUC AUC      U
GUUUAUUUUACAUCGAGUUAU^   --   C  GAAG           A     -   UAAUGA 
 .       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P4a_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P4a_3p*
mirBase accessionNone
Sequence 
38- ACUGCAAUAUGAGCACUUGAAGU -61
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