MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P2a

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635908.1: 307076-307140 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a)		 Mir-17-P1a KI635908.1: 306927-306985 [+] UCSC Ensembl
Mir-17-P2a KI635908.1: 307076-307140 [+] UCSC Ensembl
Mir-19-P1a-v1 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-19-P1a-v2 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-17-P4a KI635908.1: 307386-307446 [+] UCSC Ensembl
Mir-19-P2a KI635908.1: 307499-307558 [+] UCSC Ensembl
Mir-92-P1a KI635908.1: 307621-307678 [+] UCSC Ensembl
Seed AAGGUGC
Precursor
(pre-Mir +30nt flank)		 
UGUUGAUCUUCAGUAAAGUGUCCCUUGUGUUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGAAUCUACUGCCCUAAGUGCUCCUUCUGGCACAAGUAGCUCUGGCCAUCGUAGUUGGAUU
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Structure
        10          20        30          40        50        60 
UGUUGAUCUUCAGUAAA-- U  CC         --|  U   UC   U    A   UGAAGUA 
                   G GU  CUUGUGUUA  AGG GCA  UAG GCAG UAG       G
                   C CG  GAACACGGU  UCC CGU  AUC CGUC AUC       A
UUAGGUUGAUGCUACCGGU U  AU         CU^  U   GA   C    -   UAAGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P2a_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Cmi-Mir-17-P2a_3p*
mirBase accessionNone
Sequence 
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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